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SRX4122949: GSM3154217: Wild type Col-0 Ecotype Rep 4; Arabidopsis thaliana; RNA-Seq
2 ILLUMINA (HiSeq X Ten) runs: 106.8M spots, 32G bases, 12.2Gb downloads

Submitted by: NCBI (GEO)
Study: Arabidopsis TRM5 encodes a nuclear-localised tRNA guanine-N1-methyltransferase and is important for plant growth
show Abstracthide Abstract
We show that trm5 plants have less m1G in tRNAs, a slower leaf initiation rate, delayed flowering, and reduced primary root length. Late flowering correlates with reduced transcription of floral activators CO, FT, SOC1 and AP1. We also show that TRM5 methylates tRNA position 37 of several nucleus-encoded tRNA species, trm5 plants have reduced m1G and TRM5 is localized to the nucleus. Our findings highlight the importance of the post-transcriptional tRNA modification m1G37 in plant growth and development. Overall design: Identification of m1G methylation at position 37 of Arabidopsis thaliana tRNAs and Differential Expression analysis of wild type Col-0 Ecotype and trm5-1 mutant.
Sample: Wild type Col-0 Ecotype Rep 4
SAMN09257862 • SRS3337575 • All experiments • All runs
Library:
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was isolated from wild type and trm5 10-day-old Arabidopsis seedlings using the Spectrum Plant total RNA kit (SIGMA-ALDRICH) and contaminating DNA removed using DNase I (SIGMA-ALDRICH). To enrich for tRNAs, 10μg of total RNA was separated on a 10% polyacrylamide gel, the region containing 65-85 nts was removed and RNA was purified as previously described in Burgess et al. 2015. Libraries were prepared as per manufacturer's instruction with Illumina's TruSeq RNA sample kit v2
Experiment attributes:
GEO Accession: GSM3154217
Links:
Runs: 2 runs, 106.8M spots, 32G bases, 12.2Gb
Run# of Spots# of BasesSizePublished
SRR721602727,906,1128.4G3.2Gb2019-08-28
SRR721602878,857,49223.7G9Gb2019-08-28

ID:
5608510

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